Function to sync and get the most updated and newly added data recipes through the pubic "rworkflow/ReUseDataRecipe" GitHub repository or user-specified private GitHub repository.
Usage
recipeUpdate(
cachePath = "ReUseDataRecipe",
force = FALSE,
remote = FALSE,
repos = "rworkflow/ReUseDataRecipe"
)
Arguments
- cachePath
A character string specifying the name for the
BiocFileCache
object to store the ReUseData recipes. Once specified here, must use the same forcachePath
argument inrecipeSearch
, andrecipeLoad
. Default is "ReUseDataRecipe".- force
Whether to remove existing and regenerate recipes cache. Default is FALSE. Only use if any old recipes that have been previously cached locally are updated remotely (on GitHub
repos
).- remote
Whether to download the data recipes directly from a GitHub repository. Default is FALSE.
- repos
The GitHub repository containing data recipes that are to be synced to local cache. Only works when
remote=TRUE
. Default is "rworkflow/ReUseDataRecipe" GitHub repository where public data recipes are saved, which might be more up-to-date than the recipes contained inReUseData
package. It can also be a private GitHub repository where users save their own data recipes.