cwlSearch

Function to search Rcwl tools and pipelines.

cwlSearch(keyword, bfc = NULL, type = NULL, ...)

Arguments

keyword	A (vector of) character string as keywords to search for tools or pipelines. Will be used to match patterns against `rname`, `rpath`, `fpath`, `Command` and `Container` column in the `bfc` object.
bfc	The `BiocFileCache` object for the recipes returned from `cwlUpdate`. The default is NULL which automatically detect the "Rcwl" cache directory.
type	The `Type` to filter the results, "pipeline" or "tool".
...	More options from the internal `bfcquery` function.

Value

A BiocFileCache tibble.

Examples

if (FALSE) {
tls <- cwlSearch(c("bwa", "mem"))
data.frame(tls)
}