Search existing data recipes.
Usage
recipeSearch(keywords = character(), cachePath = "ReUseDataRecipe")Arguments
- keywords
character vector of keywords to be matched to the recipe names. If not specified, function returns the full recipe list.
- cachePath
A character string for the recipe cache. Must match the one specified in
recipeUpdate(). Default is "ReUseDataRecipe".
Examples
recipeSearch()
#> recipeHub with 15 records
#> cache path: /home/qhu/.cache/R/ReUseDataRecipe
#> # recipeSearch() to query specific recipes using multipe keywords
#> # recipeUpdate() to update the local recipe cache
#>
#> name
#> BFC466 | bowtie2_index
#> BFC467 | echo_out
#> BFC468 | ensembl_liftover
#> BFC469 | gcp_broad_gatk_hg19
#> BFC470 | gcp_broad_gatk_hg38
#> ... ...
#> BFC476 | hisat2_index
#> BFC477 | reference_genome
#> BFC478 | salmon_index
#> BFC479 | STAR_index
#> BFC480 | ucsc_database
recipeSearch("gencode")
#> recipeHub with 3 records
#> cache path: /home/qhu/.cache/R/ReUseDataRecipe
#> # recipeSearch() to query specific recipes using multipe keywords
#> # recipeUpdate() to update the local recipe cache
#>
#> name
#> BFC473 | gencode_annotation
#> BFC474 | gencode_genome_grch38
#> BFC475 | gencode_transcripts
recipeSearch(c("STAR", "index"))
#> recipeHub with 1 records
#> cache path: /home/qhu/.cache/R/ReUseDataRecipe
#> # recipeSearch() to query specific recipes using multipe keywords
#> # recipeUpdate() to update the local recipe cache
#>
#> name
#> BFC479 | STAR_index