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Rcwl

R and Bioconductor toolchain for bioinformatics tools and workflows

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Familar R interface

No need to learn a new language to write and execute bioinformatics pipelines. Hassle free software management with build-in support for Conda, Docker, Singularity.

Ready-to-use pipelines

Hundreds of pre-built and highly modularized bioinformatics tools and pipelines for common bioinformatics tasks, e.g., variant calling, read alignment, neoantigen prediction, etc.

Community efforts

Will be providing best practice pipeline development guidelines, and benchmark datasets to facilitate community contribution of high-quality workflows.