Function reference • Rcwl

All functions
`InputArrayParam()` `InputParam()` `InputParamList()` `OutputArrayParam()` `OutputParam()` `OutputParamList()` `stepInParam()` `stepInParamList()` `cwlStepList()`	All classes defined in the package of `Rcwl` and the class constructor functions.
`Rcwl-package`	Rcwl-package
`requireDocker()` `requireJS()` `requireSoftware()` `requireInitialWorkDir()` `Dirent()` `requireManifest()` `requireSubworkflow()` `requireScatter()` `requireMultipleInput()` `requireStepInputExpression()` `requireRscript()`	CWL requirements functions
`cwlVersion()` `cwlVersion<-`() `cwlClass()` `cwlClass<-`() `baseCommand()` `baseCommand<-`() `arguments()` `arguments<-`() `hints()` `hints<-`() `requirements()` `requirements<-`() `inputs()` `$`(<cwlProcess>) `$<-`(<cwlProcess>) `outputs()` `stdOut()` `stdOut<-`() `extensions()` `extensions<-`() `short()`	cwlProcess methods
`cwlProcess()`	Parameters for CWL
`cwlShiny()`	cwlShiny
`cwlStep()`	cwlStep function
`runs()`	cwlWorkflow methods
`cwlWorkflow()` `+`(<cwlWorkflow>,<cwlStep>) `steps()` `steps<-`()	cwlWorkflow function
`install_udocker()`	install udocker
`plotCWL()`	plotCWL
`readCWL()`	Read CWL Function to read CWL command or workflow files.
`runCWL()`	run cwlProcess
`runCWLBatch()`	run CWL with batchtools
`writeCWL()`	Write CWL

Reference