# gcp_broad_gatk_hg38

GATK annotation bundle for hg38 from GCP (gs://gcp-public-data--broad-references/hg38/v0/)
Recipe source code: https://github.com/rworkflow/ReUseDataRecipe/blob/master/gcp_broad_gatk_hg38.R (opens new window)
Data source: https://console.cloud.google.com/storage/browser/gcp-public-data--broad-references/hg38/v0 (opens new window)

# plot

## gcp_broad_gatk_hg38

# Inputs

label type description
filename file name string The file basename to download from the broad GCP bucket
idx index string? The 'idx' or 'tbi' index file if existing

# Outputs

label type description
gfile gfile File[] The downloaded annotation files

# Example:

recipeLoad('gcp_broad_gatk_hg38', return = TRUE)
gcp_broad_gatk_hg38$filename <- '1000G_omni2.5.hg38.vcf.gz'
getData(gcp_broad_gatk_hg38, outdir = 'data/folder', notes = c('gcp', 'broad', 'reference', 'hg38', 'v0', '1000G', 'omni2.5')