gencode_transcripts Download, unzip, and index transcripts files from gencode Recipe source code: https://github.com/rworkflow/ReUseDataRecipe/blob/master/gencode_transcripts.R (opens new window) Data source: http://ftp.ebi.ac.uk/pub/databases/gencode/ (opens new window)
plot
label type description species species string 'human' or 'mouse' version version string Character string. Case sensitive. must match available versions for each species under source URL link. e.g., 'M31' (species='mouse'), '42' (species='human')
Outputs label type description transcripts transcripts File[] the samtool indexed annotation files: *transcripts.fa
, *transcripts.fa.fai
Example: