gencode_genome_grch38

Download human genome GRCh38 from GENCODE release 42
Recipe source code: https://github.com/rworkflow/ReUseDataRecipe/blob/master/gencode_genome_grch38.R (opens new window)
Data source: https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_42/GRCh38.primary_assembly.genome.fa.gz (opens new window)

plot

Inputs

Outputs

	label	type	description
genome	genome	File[]	The GRCh38.primary_assembly.genome.fa.gz fasta file

Example:

Get data from evaluting recipe
gencode_genome_grch38 <- recipeLoad('gencode_genome_grch38')
getData(gencode_genome_grch38, outdir = 'data/folder', notes = c('gencode', 'genome', 'grch38', 'release 42'))

## Get data from local catch
dataUpdate('data/folder')
dataSearch(c('gencode', 'genome', 'grch38', '42'))

## Get data from Google bucket directly
dataUpdate('data/folder', cloud = TRUE)
dh <- dataSearch(c('gencode', 'genome', 'grch38'))
getCloudData(dh[dataNames(dh) == 'GRCh38.primary_assembly.genome.fa.gz'], outdir = 'data/folder')