# AnnPhaseVcf
Recipe source code: https://github.com/rworkflow/RcwlRecipes/blob/master/Rcwl/pl_AnnPhaseVcf.R (opens new window)
# plot
# Inputs
| label | type | description | |
|---|---|---|---|
| svcf | File | ||
| gvcf | File | ||
| ref | File | ||
| VepDir | Directory | ||
| tbam | File | ||
| rbam | File | ||
| tsample | string | ||
| nsample | string | ||
| rnaseqs | File[] | ||
| kallistoIdx | File | ||
| threads | int |
# Outputs
| label | type | description | |
|---|---|---|---|
| annVcf | File | ||
| phasedVCF | File |
# steps
| label | doc | |
|---|---|---|
| VCFvep | ||
| dVCFcoverage | ||
| rVCFcoverage | ||
| VCFexpression | ||
| PhaseVcf |