# mergeBamDup
Recipe source code: https://github.com/rworkflow/RcwlRecipes/blob/master/Rcwl/pl_mergeBamDup.R (opens new window)
# plot
# Inputs
| label | type | description | |
|---|---|---|---|
| ibam | File[] | ||
| obam | string |
# Outputs
| label | type | description | |
|---|---|---|---|
| oBam | File | ||
| matrix | File | ||
| Idx | File | ||
| stat | File |
# steps
| label | doc | |
|---|---|---|
| mergeBam | ||
| markdup | ||
| samtools_index | ||
| samtools_flagstat |