# mergeBamDup


Recipe source code: https://github.com/rworkflow/RcwlRecipes/blob/master/Rcwl/pl_mergeBamDup.R (opens new window)

# plot

## mergeBamDup

# Inputs

label type description
ibam File[]
obam string

# Outputs

label type description
oBam File
matrix File
Idx File
stat File

# steps

label doc
mergeBam
markdup
samtools_index
samtools_flagstat