# phaseVcf
Recipe source code: https://github.com/rworkflow/RcwlRecipes/blob/master/Rcwl/pl_phaseVcf.R (opens new window)
# plot
# Inputs
| label | type | description | |
|---|---|---|---|
| gvariant | File | ||
| svariant | File | ||
| ref | File | ||
| bam | File | ||
| outvcf | string | ||
| nsample | string | ||
| tsample | string |
# Outputs
| label | type | description | |
|---|---|---|---|
| pvcf | File |
# steps
| label | doc | |
|---|---|---|
| splitSample | ||
| renameGVcf | ||
| renameSVcf | ||
| combineVariants | ||
| sortVcf | ||
| ReadBackedPhasing | ||
| bgzip | ||
| tabixIndex |
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