# vcfCoverage
Recipe source code: https://github.com/rworkflow/RcwlRecipes/blob/master/Rcwl/pl_vcfCoverage.R (opens new window)
# plot
# Inputs
| label | type | description | |
|---|---|---|---|
| vcf | File | ||
| sample | string | ||
| bam | File | ||
| ntype | string | ||
| ref | File |
# Outputs
| label | type | description | |
|---|---|---|---|
| outvcf | File |
# steps
| label | doc | |
|---|---|---|
| decompose | ||
| readcount | ||
| readcount_annotator_snv | ||
| readcount_annotator_indel |