# vcfExpression
Recipe source code: https://github.com/rworkflow/RcwlRecipes/blob/master/Rcwl/pl_vcfExpression.R (opens new window)
# plot
# Inputs
| label | type | description | |
|---|---|---|---|
| rnafqs | File[] | ||
| kallistoIdx | File | ||
| threads | int | ||
| svcf | File |
# Outputs
| label | type | description | |
|---|---|---|---|
| ExpVcf | File |
# steps
| label | doc | |
|---|---|---|
| kallistoQuant | ||
| cleanExp | ||
| vcfExpAnn | ||
| T2Gene | ||
| vcfgExpAnn | ||
| bgzip | ||
| tabixIndex |
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