# mantaStrelka
Recipe source code: https://github.com/rworkflow/RcwlRecipes/blob/master/Rcwl/pl_mantaStrelka.R (opens new window)
# plot
# Inputs
| label | type | description | |
|---|---|---|---|
| tbam | File | ||
| nbam | File | ||
| ref | File | ||
| region | File? | ||
| exome | boolean |
# Outputs
| label | type | description | |
|---|---|---|---|
| snvs | File | ||
| indels | File | ||
| somaticSV | File | ||
| diploidSV | File |
# steps
| label | doc | |
|---|---|---|
| manta | ||
| strelka |
← lumpy mergeBamDup →