# hapCall
Recipe source code: https://github.com/rworkflow/RcwlRecipes/blob/master/Rcwl/pl_hapCall.R (opens new window)
# plot
# Inputs
| label | type | description | |
|---|---|---|---|
| bam | string | ||
| intervals | string | ||
| cromwell | File | ||
| wdl | File | ||
| tmpl | File |
# Outputs
| label | type | description | |
|---|---|---|---|
| hclog | File | ||
| outdir | Directory |
# steps
| label | doc | |
|---|---|---|
| hapJson | ||
| HC | ||
| mvOut |
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