# miRDeep2PL
Recipe source code: https://github.com/rworkflow/RcwlRecipes/blob/master/Rcwl/pl_miRDeep2PL.R (opens new window)
# plot
# Inputs
| label | type | description | |
|---|---|---|---|
| reads | File | ||
| format | string | ||
| adapter | string | ||
| len | int | ||
| genome | File | ||
| miRef | File;string | ||
| miOther | File;string | ||
| precursors | File;string | ||
| species | string |
# Outputs
| label | type | description | |
|---|---|---|---|
| csvfiles | File[] | ||
| htmls | File[] | ||
| bed | File | ||
| expression | Directory | ||
| mirna_results | Directory | ||
| pdfs | Directory | ||
| preads | File | ||
| arf | File |
# steps
| label | doc | |
|---|---|---|
| Mapper | ||
| miRDeep2 |