bwaMM
Recipe source code: https://github.com/rworkflow/RcwlRecipes/blob/master/Rcwl/pl_bwaMM.R (opens new window)
plot
| label | type | description |
|---|
| outBam | | string | |
| RG | | string[] | |
| threads | | int | |
| Ref | | File | |
| FQ1s | | File[] | |
| FQ2s | | File[] | |
Outputs
| label | type | description |
|---|
| matrix | | File | |
| Idx | | File | |
| flagstat | | File | |
steps
| label | doc |
|---|
| bwaAlign | | |
| mergeBamDup | | |
title: bwaMM
description:
Author:
Last updated: 2022-02-16
type: article
bwaMM
Recipe source code: https://github.com/rworkflow/RcwlRecipes/blob/master/Rcwl/pl_bwaMM.R (opens new window)
plot
| label | type | description |
|---|
| outBam | | string | |
| RG | | string[] | |
| threads | | int | |
| Ref | | File | |
| FQ1s | | File[] | |
| FQ2s | | File[] | |
Outputs
| label | type | description |
|---|
| matrix | | File | |
| Idx | | File | |
| flagstat | | File | |
steps
| label | doc |
|---|
| bwaAlign | | |
| mergeBamDup | | |